Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Ercc3P49135 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC14.15□□□□□ -0.14
Ercc3P49135 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 CT025694.1-201ENSMUST00000226188 934 ntBASIC14.15□□□□□ -0.14
Ercc3P49135 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Ercc3P49135 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC14.15□□□□□ -0.14
Ercc3P49135 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Ercc3P49135 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ercc3P49135 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm28719-201ENSMUST00000187779 1757 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Ercc3P49135 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Ercc3P49135 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm25732-201ENSMUST00000175168 60 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm28071-201ENSMUST00000190355 478 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 Olfr1347-205ENSMUST00000220413 964 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Ercc3P49135 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Ercc3P49135 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC14.14□□□□□ -0.15
Ercc3P49135 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ercc3P49135 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm43868-201ENSMUST00000205187 2114 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Gm13812-201ENSMUST00000118061 1347 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 Gm13810-201ENSMUST00000118584 1347 ntBASIC14.14□□□□□ -0.15
Ercc3P49135 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ercc3P49135 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC14.13□□□□□ -0.15
Ercc3P49135 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Ercc3P49135 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Ercc3P49135 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC14.13□□□□□ -0.15
Ercc3P49135 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ercc3P49135 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Ercc3P49135 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Ercc3P49135 Gm15515-201ENSMUST00000117827 822 ntBASIC14.13□□□□□ -0.15
Ercc3P49135 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Mir7070-201ENSMUST00000183657 86 ntBASIC14.13□□□□□ -0.15
Ercc3P49135 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Rps4l-202ENSMUST00000204242 789 ntBASIC14.13□□□□□ -0.15
Ercc3P49135 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Gm43267-201ENSMUST00000199664 1796 ntBASIC14.13□□□□□ -0.15
Ercc3P49135 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC14.13□□□□□ -0.15
Ercc3P49135 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ercc3P49135 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ercc3P49135 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms