Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC12.49□□□□□ -0.41
Usp4P35123 Gm24548-201ENSMUST00000158650 108 ntBASIC12.49□□□□□ -0.41
Usp4P35123 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC12.49□□□□□ -0.41
Usp4P35123 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Gm6082-201ENSMUST00000215204 454 ntBASIC12.49□□□□□ -0.41
Usp4P35123 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC12.49□□□□□ -0.41
Usp4P35123 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.49□□□□□ -0.41
Usp4P35123 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.49□□□□□ -0.41
Usp4P35123 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.49□□□□□ -0.41
Usp4P35123 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Usp4P35123 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
Usp4P35123 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Usp4P35123 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Usp4P35123 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC12.48□□□□□ -0.41
Usp4P35123 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Gm3756-201ENSMUST00000169182 1355 ntBASIC12.48□□□□□ -0.41
Usp4P35123 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Usp4P35123 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.48□□□□□ -0.41
Usp4P35123 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.48□□□□□ -0.41
Usp4P35123 Gm26461-201ENSMUST00000175064 290 ntBASIC12.48□□□□□ -0.41
Usp4P35123 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC12.48□□□□□ -0.41
Usp4P35123 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC12.48□□□□□ -0.41
Usp4P35123 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.48□□□□□ -0.41
Usp4P35123 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Usp4P35123 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Usp4P35123 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Usp4P35123 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Usp4P35123 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usp4P35123 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usp4P35123 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.47□□□□□ -0.41
Usp4P35123 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC12.47□□□□□ -0.41
Usp4P35123 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 AC211878.3-201ENSMUST00000222629 2018 ntBASIC12.47□□□□□ -0.41
Usp4P35123 Gm21136-201ENSMUST00000186812 2575 ntBASIC12.47□□□□□ -0.41
Usp4P35123 Gm6605-201ENSMUST00000031488 2574 ntBASIC12.47□□□□□ -0.41
Usp4P35123 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
Usp4P35123 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Usp4P35123 Gm22323-201ENSMUST00000103832 109 ntBASIC12.47□□□□□ -0.41
Usp4P35123 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC12.47□□□□□ -0.41
Usp4P35123 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 68.2 ms