Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm13875-201ENSMUST00000120162 282 ntBASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm38241-201ENSMUST00000192641 898 ntBASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm38292-201ENSMUST00000192646 3045 ntBASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm6560-201ENSMUST00000198588 1591 ntBASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gm18986-201ENSMUST00000216029 1986 ntBASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Pcdh1F7BJK1 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm13226-201ENSMUST00000117838 404 ntBASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm14716-201ENSMUST00000120138 718 ntBASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm15610-201ENSMUST00000120584 195 ntBASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm43002-201ENSMUST00000200310 155 ntBASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 AC125374.1-201ENSMUST00000213573 1400 ntBASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 AC166095.1-201ENSMUST00000223731 1241 ntBASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Pcdh1F7BJK1 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
Pcdh1F7BJK1 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Pcdh1F7BJK1 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms