Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm11663-201ENSMUST00000117888 290 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm23085-201ENSMUST00000157849 293 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm38117-201ENSMUST00000194653 939 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm42682-201ENSMUST00000198349 1265 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cpsf3Q9QXK7 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Gm11941-201ENSMUST00000119904 610 ntBASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Gm8199-201ENSMUST00000121323 823 ntBASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.79□□□□□ -0.36
Cpsf3Q9QXK7 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cpsf3Q9QXK7 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms