Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Gm42463-201ENSMUST00000198041 4886 ntBASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lima1Q9ERG0 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 AC131068.2-201ENSMUST00000226175 1453 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm15991-202ENSMUST00000212123 3565 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm12314-201ENSMUST00000118104 538 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm12036-201ENSMUST00000120008 530 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm6007-201ENSMUST00000208170 823 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 AC166349.1-201ENSMUST00000220866 695 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lima1Q9ERG0 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Mir1247-201ENSMUST00000116706 82 ntBASIC11.75□□□□□ -0.53
Lima1Q9ERG0 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Gm13316-201ENSMUST00000140537 691 ntBASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Mir7085-201ENSMUST00000184353 66 ntBASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 AY702102-202ENSMUST00000194651 1173 ntBASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lima1Q9ERG0 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms