Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn4aQ9ER60 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn4aQ9ER60 Gm44190-201ENSMUST00000205083 1401 ntBASIC15.83■□□□□ 0.13
Scn4aQ9ER60 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn4aQ9ER60 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn4aQ9ER60 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Scn4aQ9ER60 Gm17745-201ENSMUST00000212186 1692 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Mtcp1-202ENSMUST00000114081 980 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Gm22662-201ENSMUST00000175290 256 ntBASIC15.83■□□□□ 0.12
Scn4aQ9ER60 1700026J14Rik-201ENSMUST00000180937 794 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 2010008C14Rik-201ENSMUST00000203956 593 ntBASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Fxyd7-202ENSMUST00000206341 620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Fxyd1-201ENSMUST00000039909 620 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Fxyd7-201ENSMUST00000073892 693 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Serpinb9c-202ENSMUST00000110284 1575 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Gm42971-201ENSMUST00000199228 2079 ntBASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Gm35963-201ENSMUST00000211762 1425 ntTSL 5 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Scn4aQ9ER60 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Tomm5-203ENSMUST00000107809 738 ntTSL 3 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Psme2-201ENSMUST00000111378 795 ntTSL 5 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm11380-201ENSMUST00000118067 560 ntBASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm37597-201ENSMUST00000191853 382 ntBASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm5939-201ENSMUST00000119613 2874 ntBASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm7104-201ENSMUST00000179741 2532 ntBASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Ywhaq-ps3-201ENSMUST00000120944 738 ntBASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Gm28671-201ENSMUST00000187036 692 ntBASIC15.82■□□□□ 0.12
Scn4aQ9ER60 AC133496.1-201ENSMUST00000223891 743 ntBASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Scn4aQ9ER60 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Gm9915-201ENSMUST00000066196 1383 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 AC166491.1-201ENSMUST00000227053 2308 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Gm11919-201ENSMUST00000117609 721 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Gm14699-201ENSMUST00000122340 228 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Fam47e-205ENSMUST00000175974 1016 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Gm38349-201ENSMUST00000195732 462 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 AC192333.3-201ENSMUST00000224041 463 ntBASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Scn4aQ9ER60 Setmar-201ENSMUST00000049246 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Fthl17-ps2-201ENSMUST00000122268 528 ntBASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm5860-201ENSMUST00000137810 1028 ntTSL 2 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm3898-201ENSMUST00000180221 613 ntTSL 5 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm27149-201ENSMUST00000184716 1266 ntBASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm33969-201ENSMUST00000197615 388 ntTSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms