Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm29032-201ENSMUST00000189797 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm28695-201ENSMUST00000190300 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Ighv5-7-201ENSMUST00000192302 244 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm37448-201ENSMUST00000192795 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm4780-202ENSMUST00000215200 2644 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Gm23912-201ENSMUST00000104687 87 ntBASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Gm42997-202ENSMUST00000200321 985 ntBASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdc40Q9DC48 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gm23200-201ENSMUST00000104379 132 ntBASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
Cdc40Q9DC48 Gm16481-201ENSMUST00000119074 1227 ntBASIC11.1□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms