Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Gm18827-201ENSMUST00000188341 790 ntBASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Gm42599-201ENSMUST00000201308 469 ntBASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Gm8956-201ENSMUST00000203939 825 ntBASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Gm9445-201ENSMUST00000207454 1285 ntBASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Vps28Q9D1C8 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 AC171277.1-201ENSMUST00000216902 1441 ntBASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm5419-201ENSMUST00000119301 527 ntBASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm15610-201ENSMUST00000120584 195 ntBASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm6039-201ENSMUST00000121667 1250 ntBASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm27552-201ENSMUST00000183351 62 ntBASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm27844-201ENSMUST00000183613 62 ntBASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm43068-201ENSMUST00000201095 1273 ntBASIC12.23□□□□□ -0.45
Vps28Q9D1C8 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Vps28Q9D1C8 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Ptprm-203ENSMUST00000224091 3773 ntBASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 368.5 ms