Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Smc1aQ9CU62 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
Smc1aQ9CU62 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 AC211878.3-201ENSMUST00000222629 2018 ntBASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm14921-201ENSMUST00000118643 908 ntBASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC13.39□□□□□ -0.27
Smc1aQ9CU62 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Gm6157-201ENSMUST00000199935 1897 ntBASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 AC126257.2-201ENSMUST00000215507 2300 ntBASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC13.39□□□□□ -0.27
Smc1aQ9CU62 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm13813-201ENSMUST00000120998 787 ntBASIC13.38□□□□□ -0.27
Smc1aQ9CU62 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm25732-201ENSMUST00000175168 60 ntBASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm43947-201ENSMUST00000203019 959 ntBASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm10312-201ENSMUST00000078515 489 ntBASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC13.38□□□□□ -0.27
Smc1aQ9CU62 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Cog3-203ENSMUST00000227473 4197 ntBASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 90 ms