Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Clrn1Q8K445 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
Clrn1Q8K445 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm14130-201ENSMUST00000118417 987 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm12749-201ENSMUST00000122138 1159 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm4819-201ENSMUST00000182170 1009 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm17812-201ENSMUST00000204935 318 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm44262-201ENSMUST00000204969 372 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 AC108858.2-201ENSMUST00000228186 1425 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.24□□□□□ -0.61
Clrn1Q8K445 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Clrn1Q8K445 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 AC129931.1-201ENSMUST00000228865 1861 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Gm27627-201ENSMUST00000183644 150 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 Gm9136-201ENSMUST00000193368 454 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 Gm8956-201ENSMUST00000203939 825 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Clrn1Q8K445 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 AC138329.2-201ENSMUST00000225579 1842 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Gm18263-201ENSMUST00000220846 1928 ntBASIC11.23□□□□□ -0.61
Clrn1Q8K445 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Clrn1Q8K445 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 119.7 ms