Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC11.33□□□□□ -0.6
Cdx2P43241 Gm5451-201ENSMUST00000080545 579 ntBASIC11.33□□□□□ -0.6
Cdx2P43241 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Cdx2P43241 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
Cdx2P43241 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Cdx2P43241 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cdx2P43241 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cdx2P43241 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Cdx2P43241 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC11.33□□□□□ -0.6
Cdx2P43241 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx2P43241 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cdx2P43241 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC11.32□□□□□ -0.6
Cdx2P43241 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Gm12969-201ENSMUST00000120199 1004 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Gm12990-201ENSMUST00000120372 468 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 n-R5s84-201ENSMUST00000122591 109 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC11.32□□□□□ -0.6
Cdx2P43241 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Mir6407-201ENSMUST00000184510 101 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Gm9116-201ENSMUST00000192400 1018 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Gm9136-201ENSMUST00000193368 454 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 AC165154.1-201ENSMUST00000226661 340 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cdx2P43241 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cdx2P43241 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Gm38094-201ENSMUST00000195864 2978 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Cdx2P43241 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx2P43241 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.32□□□□□ -0.6
Cdx2P43241 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Cdx2P43241 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Cdx2P43241 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm9089-201ENSMUST00000122027 526 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm8459-201ENSMUST00000162504 760 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm17798-201ENSMUST00000182282 1035 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm28937-201ENSMUST00000185413 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm29400-201ENSMUST00000187208 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm28662-201ENSMUST00000188446 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm28251-201ENSMUST00000188835 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm37318-201ENSMUST00000194325 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm38017-201ENSMUST00000194768 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm37287-201ENSMUST00000195449 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm37793-201ENSMUST00000195548 695 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm3017-201ENSMUST00000203603 1126 ntBASIC11.31□□□□□ -0.6
Cdx2P43241 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC11.31□□□□□ -0.6
Cdx2P43241 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC11.31□□□□□ -0.6
Cdx2P43241 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Cdx2P43241 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx2P43241 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms