Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.83□□□□□ -0.19
Traf1P39428 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Traf1P39428 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Traf1P39428 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
Traf1P39428 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Traf1P39428 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Traf1P39428 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Traf1P39428 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC13.83□□□□□ -0.2
Traf1P39428 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
Traf1P39428 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Gm22334-201ENSMUST00000158070 133 ntBASIC13.83□□□□□ -0.2
Traf1P39428 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC13.83□□□□□ -0.2
Traf1P39428 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC13.83□□□□□ -0.2
Traf1P39428 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC13.83□□□□□ -0.2
Traf1P39428 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.83□□□□□ -0.2
Traf1P39428 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC13.83□□□□□ -0.2
Traf1P39428 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC13.83□□□□□ -0.2
Traf1P39428 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Traf1P39428 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Gm10152-201ENSMUST00000193475 1344 ntBASIC13.83□□□□□ -0.2
Traf1P39428 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Traf1P39428 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Traf1P39428 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 AC173482.6-201ENSMUST00000225889 1741 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm37513-201ENSMUST00000194830 2268 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Gm38378-201ENSMUST00000195153 2268 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC13.82□□□□□ -0.2
Traf1P39428 n-R5s14-201ENSMUST00000122688 107 ntBASIC13.82□□□□□ -0.2
Traf1P39428 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm5523-201ENSMUST00000180415 997 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Gm28686-201ENSMUST00000187404 609 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Gm42682-201ENSMUST00000198349 1265 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Gm9797-202ENSMUST00000218003 294 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
Traf1P39428 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 AC129931.1-201ENSMUST00000228865 1861 ntBASIC13.82□□□□□ -0.2
Traf1P39428 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Traf1P39428 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Traf1P39428 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Traf1P39428 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Traf1P39428 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Traf1P39428 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Traf1P39428 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC13.81□□□□□ -0.2
Traf1P39428 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Traf1P39428 Gm37131-201ENSMUST00000192502 1561 ntBASIC13.81□□□□□ -0.2
Traf1P39428 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Traf1P39428 Gm13809-201ENSMUST00000117921 597 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms