Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Lire1P11260 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Phc1-203ENSMUST00000112600 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC11.42□□□□□ -0.58
Lire1P11260 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC11.42□□□□□ -0.58
Lire1P11260 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC11.42□□□□□ -0.58
Lire1P11260 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.42□□□□□ -0.58
Lire1P11260 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Lire1P11260 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC11.42□□□□□ -0.58
Lire1P11260 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC11.42□□□□□ -0.58
Lire1P11260 Mir7070-201ENSMUST00000183657 86 ntBASIC11.42□□□□□ -0.58
Lire1P11260 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
Lire1P11260 Ighv1-62-201ENSMUST00000193406 350 ntBASIC11.42□□□□□ -0.58
Lire1P11260 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC11.42□□□□□ -0.58
Lire1P11260 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC11.42□□□□□ -0.58
Lire1P11260 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Lire1P11260 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Lire1P11260 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Lire1P11260 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.42□□□□□ -0.58
Lire1P11260 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Lire1P11260 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.42□□□□□ -0.58
Lire1P11260 Gm38292-201ENSMUST00000192646 3045 ntBASIC11.42□□□□□ -0.58
Lire1P11260 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Lire1P11260 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.42□□□□□ -0.58
Lire1P11260 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC11.42□□□□□ -0.58
Lire1P11260 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Tti2-204ENSMUST00000210129 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lire1P11260 Gm42669-202ENSMUST00000160160 3080 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Lire1P11260 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.41□□□□□ -0.58
Lire1P11260 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Lao1-201ENSMUST00000058651 2349 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC11.41□□□□□ -0.58
Lire1P11260 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Gm12997-201ENSMUST00000120207 640 ntBASIC11.41□□□□□ -0.58
Lire1P11260 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.41□□□□□ -0.58
Lire1P11260 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC11.41□□□□□ -0.58
Lire1P11260 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC11.41□□□□□ -0.58
Lire1P11260 AC122371.3-201ENSMUST00000223402 1061 ntBASIC11.41□□□□□ -0.58
Lire1P11260 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Gm42863-201ENSMUST00000197875 2958 ntBASIC11.41□□□□□ -0.58
Lire1P11260 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.41□□□□□ -0.58
Lire1P11260 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms