Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC9.84□□□□□ -0.83
Hmgb3O54879 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Mir6956-201ENSMUST00000183598 62 ntBASIC9.84□□□□□ -0.83
Hmgb3O54879 Mir7654-201ENSMUST00000185082 70 ntBASIC9.84□□□□□ -0.83
Hmgb3O54879 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Fyco1-201ENSMUST00000084715 7949 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm38055-201ENSMUST00000195353 2217 ntBASIC9.84□□□□□ -0.83
Hmgb3O54879 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm44775-201ENSMUST00000207266 1456 ntBASIC9.84□□□□□ -0.83
Hmgb3O54879 Slco5a1-204ENSMUST00000136197 5123 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
Hmgb3O54879 4931406P16Rik-201ENSMUST00000085592 5798 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Olfr1278-206ENSMUST00000216229 6819 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm45428-201ENSMUST00000209619 1789 ntBASIC9.83□□□□□ -0.84
Hmgb3O54879 Adgrl2-217ENSMUST00000200154 5412 ntTSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC9.83□□□□□ -0.84
Hmgb3O54879 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Olfr943-202ENSMUST00000213176 8275 ntAPPRIS ALT2 TSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Phf21a-204ENSMUST00000111290 6332 ntTSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Ubn2-205ENSMUST00000160583 14644 ntAPPRIS P2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm12928-201ENSMUST00000117115 573 ntBASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm37042-201ENSMUST00000193816 581 ntBASIC9.83□□□□□ -0.84
Hmgb3O54879 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 n-R5s77-201ENSMUST00000083757 119 ntBASIC9.83□□□□□ -0.84
Hmgb3O54879 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm21939-201ENSMUST00000221137 2773 ntBASIC9.83□□□□□ -0.84
Hmgb3O54879 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC9.83□□□□□ -0.84
Hmgb3O54879 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Gm37580-201ENSMUST00000192408 2800 ntBASIC9.83□□□□□ -0.84
Hmgb3O54879 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Pms2-209ENSMUST00000148011 5482 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Hmgb3O54879 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Nfia-203ENSMUST00000092532 9382 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms