Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm37472-201ENSMUST00000192342 4052 ntBASIC16.78■□□□□ 0.28
Usp47Q8BY87 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm17391-201ENSMUST00000171036 126 ntBASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 Matn2-203ENSMUST00000226766 3252 ntBASIC16.78■□□□□ 0.28
Usp47Q8BY87 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp47Q8BY87 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Usp47Q8BY87 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gm14193-201ENSMUST00000105067 153 ntBASIC16.77■□□□□ 0.28
Usp47Q8BY87 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gm9550-201ENSMUST00000161130 862 ntBASIC16.77■□□□□ 0.28
Usp47Q8BY87 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gm10807-201ENSMUST00000177134 795 ntBASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC16.77■□□□□ 0.28
Usp47Q8BY87 AC122408.1-201ENSMUST00000218949 218 ntBASIC16.77■□□□□ 0.28
Usp47Q8BY87 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gm43242-201ENSMUST00000199507 1776 ntBASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 AC158355.1-201ENSMUST00000215895 1705 ntBASIC16.77■□□□□ 0.28
Usp47Q8BY87 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp47Q8BY87 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC16.77■□□□□ 0.27
Usp47Q8BY87 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Gm15881-201ENSMUST00000148792 942 ntBASIC16.77■□□□□ 0.27
Usp47Q8BY87 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC16.77■□□□□ 0.27
Usp47Q8BY87 Gm17831-201ENSMUST00000205579 900 ntBASIC16.77■□□□□ 0.27
Usp47Q8BY87 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC16.77■□□□□ 0.27
Usp47Q8BY87 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp47Q8BY87 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp47Q8BY87 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms