Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm22058-201ENSMUST00000083393 310 ntBASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Sh3rf1Q69ZI1 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 AC123857.2-201ENSMUST00000225756 1582 ntBASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Gm13875-201ENSMUST00000120162 282 ntBASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Gm5597-201ENSMUST00000182353 1193 ntBASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Gm5869-201ENSMUST00000200248 1257 ntBASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Gm44967-201ENSMUST00000207047 631 ntBASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sh3rf1Q69ZI1 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm4366-201ENSMUST00000201488 1342 ntBASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm38273-201ENSMUST00000194987 2382 ntBASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm45496-201ENSMUST00000209918 2917 ntBASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm14017-201ENSMUST00000121934 386 ntBASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm24990-201ENSMUST00000157406 323 ntBASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm5950-201ENSMUST00000213337 772 ntBASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms