Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Tnfsf4P43488 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Tnfsf4P43488 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Tnfsf4P43488 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.52□□□□□ -0.56
Tnfsf4P43488 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Tnfsf4P43488 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Tnfsf4P43488 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 AC126257.1-201ENSMUST00000213195 1536 ntBASIC11.52□□□□□ -0.57
Tnfsf4P43488 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.52□□□□□ -0.57
Tnfsf4P43488 Mospd4-201ENSMUST00000180618 576 ntBASIC11.52□□□□□ -0.57
Tnfsf4P43488 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Gm38241-201ENSMUST00000192641 898 ntBASIC11.52□□□□□ -0.57
Tnfsf4P43488 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Gm19994-201ENSMUST00000217086 586 ntBASIC11.52□□□□□ -0.57
Tnfsf4P43488 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Tnfsf4P43488 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm23931-201ENSMUST00000103842 109 ntBASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm15824-201ENSMUST00000119516 955 ntBASIC11.51□□□□□ -0.57
Tnfsf4P43488 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.51□□□□□ -0.57
Tnfsf4P43488 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm42627-201ENSMUST00000197347 224 ntBASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm43133-201ENSMUST00000197472 463 ntBASIC11.51□□□□□ -0.57
Tnfsf4P43488 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm5950-201ENSMUST00000213337 772 ntBASIC11.51□□□□□ -0.57
Tnfsf4P43488 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Tnfsf4P43488 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC11.5□□□□□ -0.57
Tnfsf4P43488 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Gm3836-201ENSMUST00000211377 1613 ntBASIC11.5□□□□□ -0.57
Tnfsf4P43488 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.5□□□□□ -0.57
Tnfsf4P43488 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.5□□□□□ -0.57
Tnfsf4P43488 Gm12164-201ENSMUST00000121695 551 ntBASIC11.5□□□□□ -0.57
Tnfsf4P43488 Gm14441-201ENSMUST00000121960 540 ntBASIC11.5□□□□□ -0.57
Tnfsf4P43488 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Tnfsf4P43488 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.5□□□□□ -0.57
Tnfsf4P43488 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Tnfsf4P43488 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms