Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm11663-201ENSMUST00000117888 290 ntBASIC13.86□□□□□ -0.19
Traf1P39428 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC13.86□□□□□ -0.19
Traf1P39428 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Traf1P39428 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.86□□□□□ -0.19
Traf1P39428 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.86□□□□□ -0.19
Traf1P39428 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
Traf1P39428 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13.86□□□□□ -0.19
Traf1P39428 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 AC159819.2-201ENSMUST00000216151 342 ntBASIC13.86□□□□□ -0.19
Traf1P39428 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.86□□□□□ -0.19
Traf1P39428 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Ntng1-201ENSMUST00000051253 327 ntBASIC13.86□□□□□ -0.19
Traf1P39428 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Traf1P39428 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 AC157950.1-201ENSMUST00000217561 2168 ntBASIC13.86□□□□□ -0.19
Traf1P39428 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.86□□□□□ -0.19
Traf1P39428 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Traf1P39428 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
Traf1P39428 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Traf1P39428 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Traf1P39428 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Traf1P39428 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.85□□□□□ -0.19
Traf1P39428 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Traf1P39428 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC13.85□□□□□ -0.19
Traf1P39428 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC13.85□□□□□ -0.19
Traf1P39428 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Gm11509-201ENSMUST00000117358 325 ntBASIC13.85□□□□□ -0.19
Traf1P39428 Gm15432-201ENSMUST00000121106 195 ntBASIC13.85□□□□□ -0.19
Traf1P39428 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC13.85□□□□□ -0.19
Traf1P39428 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.85□□□□□ -0.19
Traf1P39428 Mir3547-201ENSMUST00000175461 88 ntBASIC13.85□□□□□ -0.19
Traf1P39428 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
Traf1P39428 Gm19353-201ENSMUST00000184561 445 ntBASIC13.85□□□□□ -0.19
Traf1P39428 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Traf1P39428 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Traf1P39428 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Traf1P39428 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC13.85□□□□□ -0.19
Traf1P39428 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Traf1P39428 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC13.84□□□□□ -0.19
Traf1P39428 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC13.84□□□□□ -0.19
Traf1P39428 Gm18893-201ENSMUST00000198416 943 ntBASIC13.84□□□□□ -0.19
Traf1P39428 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 AC122408.1-201ENSMUST00000218949 218 ntBASIC13.84□□□□□ -0.19
Traf1P39428 AC151275.1-201ENSMUST00000224870 585 ntBASIC13.84□□□□□ -0.19
Traf1P39428 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Traf1P39428 Gm10686-201ENSMUST00000215389 3247 ntBASIC13.84□□□□□ -0.19
Traf1P39428 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Traf1P39428 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms