Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 AC241621.2-201ENSMUST00000223991 2151 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm13142-201ENSMUST00000117213 1453 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm18227-201ENSMUST00000211082 1468 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Svil-211ENSMUST00000143254 6594 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm24934-201ENSMUST00000103764 111 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm22323-201ENSMUST00000103832 109 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm9083-201ENSMUST00000120423 819 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.09□□□□□ -0.63
Cd40lgP27548 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm26361-201ENSMUST00000158868 186 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Cd40lgP27548 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm44967-201ENSMUST00000207047 631 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm8712-201ENSMUST00000221090 701 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 AC123665.1-201ENSMUST00000228204 438 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Gm28323-201ENSMUST00000186817 2499 ntBASIC11.09□□□□□ -0.63
Cd40lgP27548 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cd40lgP27548 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.09□□□□□ -0.63
Cd40lgP27548 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.63
Cd40lgP27548 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Cd40lgP27548 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Gm14130-201ENSMUST00000118417 987 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 Gm14832-201ENSMUST00000121289 322 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Gm9630-201ENSMUST00000178304 885 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Gm38317-201ENSMUST00000195564 343 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 AC093022.1-201ENSMUST00000226949 1072 ntBASIC11.08□□□□□ -0.64
Cd40lgP27548 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.08□□□□□ -0.64
Cd40lgP27548 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cd40lgP27548 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms