Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC12.9□□□□□ -0.34
RaraP11416 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC12.9□□□□□ -0.34
RaraP11416 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC12.9□□□□□ -0.34
RaraP11416 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC12.9□□□□□ -0.34
RaraP11416 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Olfr284-202ENSMUST00000206647 966 ntBASIC12.9□□□□□ -0.34
RaraP11416 AC154222.2-201ENSMUST00000225848 607 ntBASIC12.9□□□□□ -0.34
RaraP11416 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
RaraP11416 Gm25857-201ENSMUST00000082788 129 ntBASIC12.9□□□□□ -0.34
RaraP11416 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
RaraP11416 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
RaraP11416 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC12.9□□□□□ -0.34
RaraP11416 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC12.9□□□□□ -0.34
RaraP11416 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RaraP11416 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
RaraP11416 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.89□□□□□ -0.35
RaraP11416 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
RaraP11416 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Gm29396-201ENSMUST00000185659 716 ntBASIC12.89□□□□□ -0.35
RaraP11416 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Gm37489-201ENSMUST00000191883 159 ntBASIC12.89□□□□□ -0.35
RaraP11416 Gm38241-201ENSMUST00000192641 898 ntBASIC12.89□□□□□ -0.35
RaraP11416 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.89□□□□□ -0.35
RaraP11416 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.89□□□□□ -0.35
RaraP11416 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC12.89□□□□□ -0.35
RaraP11416 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
RaraP11416 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RaraP11416 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Gm37931-201ENSMUST00000194686 2866 ntBASIC12.89□□□□□ -0.35
RaraP11416 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RaraP11416 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RaraP11416 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.88□□□□□ -0.35
RaraP11416 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
RaraP11416 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
RaraP11416 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.88□□□□□ -0.35
RaraP11416 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
RaraP11416 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
RaraP11416 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.88□□□□□ -0.35
RaraP11416 Gm36991-201ENSMUST00000191800 648 ntBASIC12.88□□□□□ -0.35
RaraP11416 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Olfr793-ps1-201ENSMUST00000205161 895 ntBASIC12.88□□□□□ -0.35
RaraP11416 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.88□□□□□ -0.35
RaraP11416 Gm19324-201ENSMUST00000213229 1169 ntBASIC12.88□□□□□ -0.35
RaraP11416 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms