Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hfm1D3Z4R1 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Hfm1D3Z4R1 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm13284-201ENSMUST00000121020 547 ntBASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm11960-201ENSMUST00000122068 925 ntBASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm29067-201ENSMUST00000190821 470 ntBASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm37782-201ENSMUST00000194879 678 ntBASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 AC142266.1-201ENSMUST00000228107 415 ntBASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Hfm1D3Z4R1 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Mir453-201ENSMUST00000104732 82 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm24992-201ENSMUST00000157412 130 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm26368-201ENSMUST00000157826 118 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm26272-201ENSMUST00000179241 132 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm5267-201ENSMUST00000191574 1045 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm30946-201ENSMUST00000198288 724 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm44323-201ENSMUST00000198689 129 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm43854-201ENSMUST00000200418 394 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gm43969-201ENSMUST00000204833 535 ntBASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hfm1D3Z4R1 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Gm6170-201ENSMUST00000187672 1388 ntBASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hfm1D3Z4R1 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 78.8 ms