Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Chd3B1AR17 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC11.71□□□□□ -0.53
Chd3B1AR17 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm4797-201ENSMUST00000219075 1283 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm18974-201ENSMUST00000221478 1031 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 AC129219.2-201ENSMUST00000224324 701 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 AC112945.1-201ENSMUST00000226413 514 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 AC171241.1-201ENSMUST00000228144 1166 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm2238-201ENSMUST00000192074 3669 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm6903-201ENSMUST00000160509 1366 ntBASIC11.71□□□□□ -0.54
Chd3B1AR17 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC11.71□□□□□ -0.54
Chd3B1AR17 Gm18556-201ENSMUST00000219748 1031 ntBASIC11.71□□□□□ -0.54
Chd3B1AR17 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Chd3B1AR17 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.7□□□□□ -0.54
Chd3B1AR17 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Mir680-2-201ENSMUST00000102163 110 ntBASIC11.7□□□□□ -0.54
Chd3B1AR17 Gm23251-201ENSMUST00000103773 110 ntBASIC11.7□□□□□ -0.54
Chd3B1AR17 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.7□□□□□ -0.54
Chd3B1AR17 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC11.7□□□□□ -0.54
Chd3B1AR17 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Gm43058-201ENSMUST00000197645 625 ntBASIC11.7□□□□□ -0.54
Chd3B1AR17 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC11.7□□□□□ -0.54
Chd3B1AR17 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
Chd3B1AR17 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 AC135469.1-201ENSMUST00000225984 772 ntBASIC11.7□□□□□ -0.54
Chd3B1AR17 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Chd3B1AR17 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Chd3B1AR17 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Gm4780-202ENSMUST00000215200 2644 ntBASIC11.7□□□□□ -0.54
Chd3B1AR17 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Chd3B1AR17 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Gm11663-201ENSMUST00000117888 290 ntBASIC11.69□□□□□ -0.54
Chd3B1AR17 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC11.69□□□□□ -0.54
Chd3B1AR17 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Gm8574-201ENSMUST00000203207 924 ntBASIC11.69□□□□□ -0.54
Chd3B1AR17 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Chd3B1AR17 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC11.69□□□□□ -0.54
Chd3B1AR17 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms