Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Gm42706-201ENSMUST00000199733 1910 ntBASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Prpf40aQ9R1C7 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm18782-201ENSMUST00000209023 1399 ntBASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm14644-201ENSMUST00000116671 647 ntBASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm7584-201ENSMUST00000175829 940 ntBASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm9230-201ENSMUST00000188228 532 ntBASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm18711-201ENSMUST00000199341 750 ntBASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Prpf40aQ9R1C7 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm15276-201ENSMUST00000145953 498 ntBASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Gm19994-201ENSMUST00000217086 586 ntBASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 AC154252.2-201ENSMUST00000223593 767 ntBASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 AC126444.1-201ENSMUST00000225938 1768 ntBASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Prpf40aQ9R1C7 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13.21□□□□□ -0.3
Prpf40aQ9R1C7 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms