Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gm14034-201ENSMUST00000120147 551 ntBASIC13.98□□□□□ -0.17
Scn11aQ9R053 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gm18065-201ENSMUST00000221395 526 ntBASIC13.98□□□□□ -0.17
Scn11aQ9R053 AC154572.1-201ENSMUST00000226098 1204 ntBASIC13.98□□□□□ -0.17
Scn11aQ9R053 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Gm5909-201ENSMUST00000119768 1281 ntBASIC13.97□□□□□ -0.17
Scn11aQ9R053 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Gm17709-201ENSMUST00000174536 1096 ntBASIC13.97□□□□□ -0.17
Scn11aQ9R053 Gm8197-202ENSMUST00000193422 934 ntBASIC13.97□□□□□ -0.17
Scn11aQ9R053 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Gm6170-201ENSMUST00000187672 1388 ntBASIC13.97□□□□□ -0.17
Scn11aQ9R053 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Scn11aQ9R053 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm4294-201ENSMUST00000105169 614 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm15003-201ENSMUST00000118884 446 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm11700-201ENSMUST00000119409 403 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm25492-201ENSMUST00000157383 129 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm9507-202ENSMUST00000180157 654 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm42816-201ENSMUST00000198433 325 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm45594-201ENSMUST00000211717 241 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm6653-201ENSMUST00000218063 1288 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm18499-201ENSMUST00000220808 1021 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm18968-201ENSMUST00000221319 862 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 CT030653.1-201ENSMUST00000224382 1279 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 AC159002.1-201ENSMUST00000226714 924 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Gm9415-201ENSMUST00000200462 1321 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 AC156031.2-201ENSMUST00000213107 3310 ntBASIC13.96□□□□□ -0.17
Scn11aQ9R053 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Scn11aQ9R053 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Gm12247-201ENSMUST00000117585 670 ntBASIC13.96□□□□□ -0.18
Scn11aQ9R053 Gm14892-201ENSMUST00000117636 267 ntBASIC13.96□□□□□ -0.18
Scn11aQ9R053 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.18
Scn11aQ9R053 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms