Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm2128-201ENSMUST00000108009 2560 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Crry-ps-201ENSMUST00000079090 1309 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 AC154517.2-201ENSMUST00000220829 2458 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm14208-201ENSMUST00000119645 678 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm37201-201ENSMUST00000191845 523 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm42997-202ENSMUST00000200321 985 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm44262-201ENSMUST00000204969 372 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm8712-201ENSMUST00000221090 701 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 AC113031.8-201ENSMUST00000227856 631 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm8385-201ENSMUST00000058999 643 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gm37542-201ENSMUST00000192563 2832 ntBASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Smc1aQ9CU62 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Gm2238-201ENSMUST00000192074 3669 ntBASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Gm25700-201ENSMUST00000177693 110 ntBASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Gm44651-201ENSMUST00000207343 372 ntBASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Smc1aQ9CU62 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Gm14263-201ENSMUST00000117955 746 ntBASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Gm8856-201ENSMUST00000185254 1144 ntBASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Smc1aQ9CU62 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms