Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Gm5083-202ENSMUST00000163056 1204 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Gm38228-201ENSMUST00000193169 1293 ntBASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Gm42599-201ENSMUST00000201308 469 ntBASIC13.3□□□□□ -0.28
Trim47Q8C0E3 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 CT025624.1-201ENSMUST00000224007 2700 ntBASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
Trim47Q8C0E3 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Gm42682-201ENSMUST00000198349 1265 ntBASIC13.29□□□□□ -0.28
Trim47Q8C0E3 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 AC153929.1-201ENSMUST00000219009 303 ntBASIC13.29□□□□□ -0.28
Trim47Q8C0E3 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim47Q8C0E3 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm2238-201ENSMUST00000192074 3669 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm14058-201ENSMUST00000116082 735 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm13035-201ENSMUST00000117496 342 ntBASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 61.2 ms