Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx55Q6ZPL9 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx55Q6ZPL9 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx55Q6ZPL9 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx55Q6ZPL9 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ddx55Q6ZPL9 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx55Q6ZPL9 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx55Q6ZPL9 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx55Q6ZPL9 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Ddx55Q6ZPL9 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm4862-201ENSMUST00000170405 438 ntBASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm37826-201ENSMUST00000195329 322 ntBASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 AC118639.2-201ENSMUST00000226289 223 ntBASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm16380-201ENSMUST00000077997 478 ntBASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ddx55Q6ZPL9 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm14807-201ENSMUST00000116640 983 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm12783-201ENSMUST00000121425 397 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm42816-201ENSMUST00000198433 325 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm18561-201ENSMUST00000206027 804 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm18463-201ENSMUST00000207258 474 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm18460-201ENSMUST00000208088 464 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm18514-201ENSMUST00000218980 436 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 AC126799.1-201ENSMUST00000221976 246 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Gm4604-201ENSMUST00000025040 390 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 n-R5s185-201ENSMUST00000083953 119 ntBASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ddx55Q6ZPL9 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm25545-201ENSMUST00000122673 323 ntBASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm8723-201ENSMUST00000166076 820 ntBASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm8701-201ENSMUST00000169259 874 ntBASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ddx55Q6ZPL9 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 125.2 ms