Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm8155-201ENSMUST00000216363 1612 ntBASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 AC159195.1-201ENSMUST00000225867 2086 ntBASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm25076-201ENSMUST00000104098 132 ntBASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm14942-201ENSMUST00000119642 336 ntBASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm7593-201ENSMUST00000187246 644 ntBASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm42657-201ENSMUST00000201746 211 ntBASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3aQ3ULJ3 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Upf3aQ3ULJ3 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Upf3aQ3ULJ3 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Upf3aQ3ULJ3 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Upf3aQ3ULJ3 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Upf3aQ3ULJ3 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Gm22442-201ENSMUST00000157256 144 ntBASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Gm37028-201ENSMUST00000194276 107 ntBASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Gm38151-201ENSMUST00000195085 289 ntBASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Gm43852-201ENSMUST00000202098 917 ntBASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Gm3028-201ENSMUST00000213805 1119 ntBASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 AC166341.2-201ENSMUST00000220571 120 ntBASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms