Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm44552-201ENSMUST00000205458 1247 ntBASIC13.26□□□□□ -0.29
Col6a1Q04857 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC13.26□□□□□ -0.29
Col6a1Q04857 AC115122.1-201ENSMUST00000224850 1040 ntBASIC13.26□□□□□ -0.29
Col6a1Q04857 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.26□□□□□ -0.29
Col6a1Q04857 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Col6a1Q04857 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Col6a1Q04857 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm42629-201ENSMUST00000199063 1102 ntBASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm2875-201ENSMUST00000211333 360 ntBASIC13.25□□□□□ -0.29
Col6a1Q04857 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm19640-201ENSMUST00000214849 464 ntBASIC13.25□□□□□ -0.29
Col6a1Q04857 CT571245.2-201ENSMUST00000218421 305 ntBASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm19009-201ENSMUST00000223072 823 ntBASIC13.25□□□□□ -0.29
Col6a1Q04857 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col6a1Q04857 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col6a1Q04857 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 AC171277.1-201ENSMUST00000216902 1441 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm12948-201ENSMUST00000119406 682 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Mir6923-201ENSMUST00000184592 72 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm43186-201ENSMUST00000198130 824 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm43778-201ENSMUST00000199438 199 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm44158-201ENSMUST00000203881 505 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm6722-201ENSMUST00000221586 390 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm42840-201ENSMUST00000200303 2251 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Col6a1Q04857 Gm44758-201ENSMUST00000206096 2068 ntBASIC13.24□□□□□ -0.29
Col6a1Q04857 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col6a1Q04857 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Col6a1Q04857 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Col6a1Q04857 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col6a1Q04857 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col6a1Q04857 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col6a1Q04857 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms