Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 AC165351.1-201ENSMUST00000219078 2020 ntBASIC18.11■□□□□ 0.49
Cux1P53564 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Cux1P53564 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Gm43334-201ENSMUST00000197740 1318 ntBASIC18.11■□□□□ 0.49
Cux1P53564 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC18.11■□□□□ 0.49
Cux1P53564 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Gm14740-201ENSMUST00000118538 1150 ntBASIC18.11■□□□□ 0.49
Cux1P53564 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC18.11■□□□□ 0.49
Cux1P53564 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC18.11■□□□□ 0.49
Cux1P53564 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC18.11■□□□□ 0.49
Cux1P53564 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC18.11■□□□□ 0.49
Cux1P53564 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC18.11■□□□□ 0.49
Cux1P53564 Gm19046-201ENSMUST00000221263 1298 ntBASIC18.11■□□□□ 0.49
Cux1P53564 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC18.11■□□□□ 0.49
Cux1P53564 AC154589.2-201ENSMUST00000228847 251 ntBASIC18.11■□□□□ 0.49
Cux1P53564 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Cux1P53564 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Rab3c-202ENSMUST00000223922 2398 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Gm10728-201ENSMUST00000194292 1829 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC18.1■□□□□ 0.49
Cux1P53564 Gm11560-201ENSMUST00000117567 948 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Gm15036-201ENSMUST00000118880 400 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Gm17070-201ENSMUST00000170463 784 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Gm27390-201ENSMUST00000184516 176 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC18.1■□□□□ 0.49
Cux1P53564 Gm5621-201ENSMUST00000187303 640 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Gm29067-201ENSMUST00000190821 470 ntBASIC18.1■□□□□ 0.49
Cux1P53564 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC18.1■□□□□ 0.49
Cux1P53564 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Cux1P53564 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Cux1P53564 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Cux1P53564 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cux1P53564 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Cux1P53564 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Gm12663-201ENSMUST00000118481 958 ntBASIC18.09■□□□□ 0.49
Cux1P53564 Gm24992-201ENSMUST00000157412 130 ntBASIC18.09■□□□□ 0.49
Cux1P53564 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Gm26976-201ENSMUST00000182929 908 ntBASIC18.09■□□□□ 0.49
Cux1P53564 Gm43671-201ENSMUST00000200422 433 ntBASIC18.09■□□□□ 0.49
Cux1P53564 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Cux1P53564 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC18.09■□□□□ 0.49
Cux1P53564 Gm44190-201ENSMUST00000205083 1401 ntBASIC18.09■□□□□ 0.49
Cux1P53564 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC18.09■□□□□ 0.49
Cux1P53564 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cux1P53564 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Cux1P53564 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Cux1P53564 Gm11619-201ENSMUST00000117474 237 ntBASIC18.08■□□□□ 0.49
Cux1P53564 Gm11578-201ENSMUST00000118530 459 ntBASIC18.08■□□□□ 0.49
Cux1P53564 Gm11979-201ENSMUST00000119629 743 ntBASIC18.08■□□□□ 0.49
Cux1P53564 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Cux1P53564 Gm9369-201ENSMUST00000196009 733 ntBASIC18.08■□□□□ 0.49
Cux1P53564 Gm44323-201ENSMUST00000198689 129 ntBASIC18.08■□□□□ 0.49
Cux1P53564 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
Cux1P53564 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC18.08■□□□□ 0.49
Cux1P53564 AC126799.1-201ENSMUST00000221976 246 ntBASIC18.08■□□□□ 0.49
Cux1P53564 AC158392.3-201ENSMUST00000224271 1284 ntBASIC18.08■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms