Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 AC069562.3-201ENSMUST00000225387 587 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Usp4P35123 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Usp4P35123 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Usp4P35123 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Usp4P35123 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC12.56□□□□□ -0.4
Usp4P35123 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Usp4P35123 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Gm43963-201ENSMUST00000203466 2488 ntBASIC12.55□□□□□ -0.4
Usp4P35123 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm7789-202ENSMUST00000211273 1400 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Usp4P35123 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC12.55□□□□□ -0.4
Usp4P35123 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Usp4P35123 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Usp4P35123 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm24830-201ENSMUST00000102024 166 ntBASIC12.55□□□□□ -0.4
Usp4P35123 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm11658-201ENSMUST00000120913 1008 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm6222-202ENSMUST00000182143 629 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Gm2467-201ENSMUST00000182266 1010 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Gm6981-201ENSMUST00000182467 1008 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm18827-201ENSMUST00000188341 790 ntBASIC12.55□□□□□ -0.4
Usp4P35123 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC12.55□□□□□ -0.4
Usp4P35123 Gm5781-201ENSMUST00000219792 443 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Gm26232-201ENSMUST00000083360 166 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Rnu1b6-201ENSMUST00000083839 166 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Gm8793-201ENSMUST00000183069 1303 ntBASIC12.55□□□□□ -0.4
Usp4P35123 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp4P35123 Gm43773-201ENSMUST00000198548 2162 ntBASIC12.54□□□□□ -0.4
Usp4P35123 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Usp4P35123 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Usp4P35123 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Gm9431-201ENSMUST00000119765 1051 ntBASIC12.54□□□□□ -0.4
Usp4P35123 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC12.54□□□□□ -0.4
Usp4P35123 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.54□□□□□ -0.4
Usp4P35123 Gm7809-201ENSMUST00000153199 742 ntBASIC12.54□□□□□ -0.4
Usp4P35123 Gm25668-201ENSMUST00000157700 129 ntBASIC12.54□□□□□ -0.4
Usp4P35123 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.54□□□□□ -0.4
Usp4P35123 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC12.54□□□□□ -0.4
Usp4P35123 Gm6621-201ENSMUST00000193251 772 ntBASIC12.54□□□□□ -0.4
Usp4P35123 CT573034.1-201ENSMUST00000222983 313 ntBASIC12.54□□□□□ -0.4
Usp4P35123 AC022775.2-201ENSMUST00000227885 646 ntBASIC12.54□□□□□ -0.4
Usp4P35123 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Usp4P35123 Mir433-201ENSMUST00000093564 124 ntBASIC12.54□□□□□ -0.4
Usp4P35123 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms