Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.47□□□□□ -0.57
Lire1P11260 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Gm10764-202ENSMUST00000220397 2335 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Lire1P11260 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Lire1P11260 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11.47□□□□□ -0.57
Lire1P11260 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Hpcal4-201ENSMUST00000059667 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Lire1P11260 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC11.46□□□□□ -0.57
Lire1P11260 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Lire1P11260 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Lire1P11260 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Lire1P11260 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Tnfrsf9-205ENSMUST00000116257 2115 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC11.46□□□□□ -0.57
Lire1P11260 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Gm26185-201ENSMUST00000157692 266 ntBASIC11.46□□□□□ -0.57
Lire1P11260 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Lire1P11260 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Lire1P11260 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.46□□□□□ -0.57
Lire1P11260 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Mettl6-204ENSMUST00000227595 1027 ntBASIC11.46□□□□□ -0.57
Lire1P11260 Morn2-202ENSMUST00000227729 656 ntBASIC11.46□□□□□ -0.57
Lire1P11260 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Lire1P11260 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Lire1P11260 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.46□□□□□ -0.57
Lire1P11260 Gm6092-201ENSMUST00000121659 2029 ntBASIC11.46□□□□□ -0.57
Lire1P11260 Cir1-201ENSMUST00000058615 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
Lire1P11260 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
Lire1P11260 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
Lire1P11260 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.46□□□□□ -0.58
Lire1P11260 Chd1-201ENSMUST00000024620 3196 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Acox2-204ENSMUST00000164598 2907 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Lire1P11260 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Lire1P11260 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC11.45□□□□□ -0.58
Lire1P11260 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 AC113441.2-201ENSMUST00000221538 1468 ntBASIC11.45□□□□□ -0.58
Lire1P11260 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC11.45□□□□□ -0.58
Lire1P11260 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 9430065F17Rik-203ENSMUST00000223845 1380 ntBASIC11.45□□□□□ -0.58
Lire1P11260 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Gm16479-201ENSMUST00000121706 932 ntBASIC11.45□□□□□ -0.58
Lire1P11260 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC11.45□□□□□ -0.58
Lire1P11260 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC11.45□□□□□ -0.58
Lire1P11260 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Mir5132-201ENSMUST00000175166 71 ntBASIC11.45□□□□□ -0.58
Lire1P11260 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC11.45□□□□□ -0.58
Lire1P11260 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms