Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn11aQ9R053 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC14.01□□□□□ -0.17
Scn11aQ9R053 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Gm18561-201ENSMUST00000206027 804 ntBASIC14.01□□□□□ -0.17
Scn11aQ9R053 Gm9661-201ENSMUST00000221611 1122 ntBASIC14.01□□□□□ -0.17
Scn11aQ9R053 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Scn11aQ9R053 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.01□□□□□ -0.17
Scn11aQ9R053 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Scn11aQ9R053 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Scn11aQ9R053 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Scn11aQ9R053 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Scn11aQ9R053 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14□□□□□ -0.17
Scn11aQ9R053 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14□□□□□ -0.17
Scn11aQ9R053 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Gm25766-201ENSMUST00000104101 131 ntBASIC14□□□□□ -0.17
Scn11aQ9R053 Gm26013-201ENSMUST00000104404 119 ntBASIC14□□□□□ -0.17
Scn11aQ9R053 Gm23694-201ENSMUST00000179335 110 ntBASIC14□□□□□ -0.17
Scn11aQ9R053 Gm43852-201ENSMUST00000202098 917 ntBASIC14□□□□□ -0.17
Scn11aQ9R053 Gm34312-201ENSMUST00000204650 1092 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC14□□□□□ -0.17
Scn11aQ9R053 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC14□□□□□ -0.17
Scn11aQ9R053 CT010506.1-201ENSMUST00000223673 349 ntBASIC14□□□□□ -0.17
Scn11aQ9R053 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Scn11aQ9R053 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Scn11aQ9R053 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Gm1840-201ENSMUST00000051687 1432 ntBASIC14□□□□□ -0.17
Scn11aQ9R053 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Scn11aQ9R053 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
Scn11aQ9R053 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.99□□□□□ -0.17
Scn11aQ9R053 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.99□□□□□ -0.17
Scn11aQ9R053 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gm25148-201ENSMUST00000104611 123 ntBASIC13.99□□□□□ -0.17
Scn11aQ9R053 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC13.99□□□□□ -0.17
Scn11aQ9R053 AC154589.2-201ENSMUST00000228847 251 ntBASIC13.99□□□□□ -0.17
Scn11aQ9R053 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Scn11aQ9R053 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Scn11aQ9R053 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 93.8 ms