Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gm7224-201ENSMUST00000121359 2066 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gm4909-201ENSMUST00000118749 794 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gm45433-201ENSMUST00000209386 247 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Abhd11os-203ENSMUST00000222613 363 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Dopey2-207ENSMUST00000227156 7340 ntBASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Cdc40Q9DC48 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm24934-201ENSMUST00000103764 111 ntBASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm7857-201ENSMUST00000117957 358 ntBASIC11.16□□□□□ -0.62
Cdc40Q9DC48 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm22902-201ENSMUST00000158488 302 ntBASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm42599-201ENSMUST00000201308 469 ntBASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm8913-201ENSMUST00000209491 641 ntBASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Cdc40Q9DC48 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms