Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Brf1Q8CFK2 Gm43075-201ENSMUST00000198613 3905 ntBASIC14.45□□□□□ -0.1
Brf1Q8CFK2 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 CT573086.2-201ENSMUST00000227277 4992 ntBASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Gm14208-201ENSMUST00000119645 678 ntBASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Brf1Q8CFK2 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm42943-201ENSMUST00000199676 3242 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm5525-201ENSMUST00000190438 1312 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm43174-201ENSMUST00000195914 2445 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm12380-201ENSMUST00000119012 544 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm15004-201ENSMUST00000119192 630 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm14441-201ENSMUST00000121960 540 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm43727-201ENSMUST00000198021 2647 ntBASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Brf1Q8CFK2 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Brf1Q8CFK2 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms