Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm7150-201ENSMUST00000122032 981 ntBASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm6108-201ENSMUST00000208365 367 ntBASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC16.38■□□□□ 0.21
Usp40Q8BWR4 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 AC166836.1-201ENSMUST00000219933 1795 ntBASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Usp40Q8BWR4 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm1848-201ENSMUST00000120711 789 ntBASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm15782-201ENSMUST00000121073 445 ntBASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm28388-201ENSMUST00000186262 437 ntBASIC16.37■□□□□ 0.21
Usp40Q8BWR4 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Gm7600-201ENSMUST00000209657 785 ntBASIC16.37■□□□□ 0.21
Usp40Q8BWR4 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Usp40Q8BWR4 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Gm11451-201ENSMUST00000118946 630 ntBASIC16.36■□□□□ 0.21
Usp40Q8BWR4 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Gm27390-201ENSMUST00000184516 176 ntBASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Gm34023-201ENSMUST00000195539 217 ntBASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Gm44421-201ENSMUST00000205064 1221 ntBASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Gm5879-201ENSMUST00000089501 1209 ntBASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Olfr584-201ENSMUST00000098210 964 ntBASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms