Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm12407-201ENSMUST00000180219 324 ntBASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm3551-201ENSMUST00000190750 664 ntBASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3aQ3ULJ3 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Mir1956-201ENSMUST00000157748 65 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Gm28388-201ENSMUST00000186262 437 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Gm2875-201ENSMUST00000211333 360 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 AC165260.2-203ENSMUST00000224237 336 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Gm37348-201ENSMUST00000193104 1789 ntBASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3aQ3ULJ3 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Gm13182-201ENSMUST00000122241 312 ntBASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Gm18159-201ENSMUST00000174516 1070 ntBASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Gm6450-201ENSMUST00000200896 574 ntBASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Gm6108-201ENSMUST00000208365 367 ntBASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 AC099645.1-201ENSMUST00000226476 1105 ntBASIC12.6□□□□□ -0.39
Upf3aQ3ULJ3 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 68.6 ms