Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm9996-201ENSMUST00000070359 913 ntBASIC14.13□□□□□ -0.15
Limch1Q3UH68 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.13□□□□□ -0.15
Limch1Q3UH68 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.13□□□□□ -0.15
Limch1Q3UH68 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm8522-201ENSMUST00000118416 1929 ntBASIC14.13□□□□□ -0.15
Limch1Q3UH68 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Arhgef3-204ENSMUST00000225949 3198 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm43267-201ENSMUST00000199664 1796 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm43075-201ENSMUST00000198613 3905 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm23200-201ENSMUST00000104379 132 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm13296-201ENSMUST00000117854 997 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm43378-201ENSMUST00000199336 582 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm45691-201ENSMUST00000206905 1120 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm45224-201ENSMUST00000208203 414 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm8913-201ENSMUST00000209491 641 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 A430010J10Rik-201ENSMUST00000054470 408 ntBASIC14.12□□□□□ -0.15
Limch1Q3UH68 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Limch1Q3UH68 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gm6189-201ENSMUST00000164487 2082 ntBASIC14.11□□□□□ -0.15
Limch1Q3UH68 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gm14247-201ENSMUST00000120950 237 ntBASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gm37131-201ENSMUST00000192502 1561 ntBASIC14.11□□□□□ -0.15
Limch1Q3UH68 Rprl1-202ENSMUST00000198476 238 ntBASIC14.11□□□□□ -0.15
Limch1Q3UH68 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Limch1Q3UH68 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms