Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm37259-201ENSMUST00000193903 849 ntBASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm32025-201ENSMUST00000217960 307 ntBASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm29100-201ENSMUST00000187564 4410 ntBASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Gm4780-202ENSMUST00000215200 2644 ntBASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Col28a1Q2UY11 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm38055-201ENSMUST00000195353 2217 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm12036-201ENSMUST00000120008 530 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm5637-201ENSMUST00000153890 1119 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm2991-201ENSMUST00000173338 480 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm38000-201ENSMUST00000192390 1215 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Ighv1-62-201ENSMUST00000193406 350 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 AC093022.4-203ENSMUST00000228523 2657 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm7993-201ENSMUST00000200970 1384 ntBASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Col28a1Q2UY11 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Gm15370-201ENSMUST00000117158 253 ntBASIC11.65□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms