Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Gm18798-201ENSMUST00000187264 1700 ntBASIC18.15■□□□□ 0.5
Cux1P53564 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Cux1P53564 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cux1P53564 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Cux1P53564 Gm12274-201ENSMUST00000120062 385 ntBASIC18.14■□□□□ 0.49
Cux1P53564 Gm4895-201ENSMUST00000181646 1137 ntBASIC18.14■□□□□ 0.49
Cux1P53564 Mir7051-201ENSMUST00000184167 73 ntBASIC18.14■□□□□ 0.49
Cux1P53564 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC18.14■□□□□ 0.49
Cux1P53564 Gm38314-201ENSMUST00000195709 625 ntBASIC18.14■□□□□ 0.49
Cux1P53564 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC18.14■□□□□ 0.49
Cux1P53564 Mt1-202ENSMUST00000211807 1085 ntBASIC18.14■□□□□ 0.49
Cux1P53564 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Cux1P53564 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC18.14■□□□□ 0.49
Cux1P53564 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cux1P53564 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Cux1P53564 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
Cux1P53564 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC18.13■□□□□ 0.49
Cux1P53564 Gm15003-201ENSMUST00000118884 446 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Gm14213-201ENSMUST00000119778 768 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Cux1P53564 Gm5599-201ENSMUST00000209602 788 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Gm3433-201ENSMUST00000210149 1058 ntBASIC18.13■□□□□ 0.49
Cux1P53564 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC18.13■□□□□ 0.49
Cux1P53564 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Cux1P53564 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC18.13■□□□□ 0.49
Cux1P53564 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Cux1P53564 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Gm24809-201ENSMUST00000175318 271 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Gm26982-201ENSMUST00000182250 1151 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Gm28833-201ENSMUST00000189671 559 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Gm18204-201ENSMUST00000209835 793 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC18.13■□□□□ 0.49
Cux1P53564 AC154305.2-201ENSMUST00000225813 901 ntBASIC18.13■□□□□ 0.49
Cux1P53564 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cux1P53564 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Cux1P53564 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Cux1P53564 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Gm42928-201ENSMUST00000197338 3339 ntBASIC18.12■□□□□ 0.49
Cux1P53564 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm15329-201ENSMUST00000121408 155 ntBASIC18.12■□□□□ 0.49
Cux1P53564 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm22379-201ENSMUST00000157480 131 ntBASIC18.12■□□□□ 0.49
Cux1P53564 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm7719-201ENSMUST00000182374 975 ntBASIC18.12■□□□□ 0.49
Cux1P53564 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC18.12■□□□□ 0.49
Cux1P53564 Gm42599-201ENSMUST00000201308 469 ntBASIC18.12■□□□□ 0.49
Cux1P53564 Gm7525-201ENSMUST00000219425 454 ntBASIC18.12■□□□□ 0.49
Cux1P53564 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cux1P53564 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Cux1P53564 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cux1P53564 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC18.11■□□□□ 0.49
Cux1P53564 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms