Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Gm13142-201ENSMUST00000117213 1453 ntBASIC14.31□□□□□ -0.12
Rfx1P48377 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rfx1P48377 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Gm37131-201ENSMUST00000192502 1561 ntBASIC14.3□□□□□ -0.12
Rfx1P48377 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Rfx1P48377 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Rfx1P48377 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Rfx1P48377 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC14.3□□□□□ -0.12
Rfx1P48377 Gm44799-201ENSMUST00000207639 1202 ntBASIC14.3□□□□□ -0.12
Rfx1P48377 Gm19324-201ENSMUST00000213229 1169 ntBASIC14.3□□□□□ -0.12
Rfx1P48377 Gm5186-201ENSMUST00000218781 920 ntBASIC14.3□□□□□ -0.12
Rfx1P48377 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Gm25007-201ENSMUST00000083808 133 ntBASIC14.3□□□□□ -0.12
Rfx1P48377 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC14.3□□□□□ -0.12
Rfx1P48377 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.3□□□□□ -0.12
Rfx1P48377 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC14.3□□□□□ -0.12
Rfx1P48377 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Rfx1P48377 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Rfx1P48377 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Rfx1P48377 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Rfx1P48377 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC14.29□□□□□ -0.12
Rfx1P48377 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.29□□□□□ -0.12
Rfx1P48377 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC14.29□□□□□ -0.12
Rfx1P48377 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC14.29□□□□□ -0.12
Rfx1P48377 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC14.29□□□□□ -0.12
Rfx1P48377 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC14.29□□□□□ -0.12
Rfx1P48377 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC14.29□□□□□ -0.12
Rfx1P48377 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC14.29□□□□□ -0.12
Rfx1P48377 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.29□□□□□ -0.12
Rfx1P48377 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC14.29□□□□□ -0.12
Rfx1P48377 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Rfx1P48377 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Rfx1P48377 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Gm44152-201ENSMUST00000205007 1691 ntBASIC14.29□□□□□ -0.12
Rfx1P48377 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Rfx1P48377 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Rfx1P48377 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx1P48377 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Rfx1P48377 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC14.28□□□□□ -0.12
Rfx1P48377 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Rfx1P48377 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC14.28□□□□□ -0.12
Rfx1P48377 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Gm14999-201ENSMUST00000121039 624 ntBASIC14.28□□□□□ -0.12
Rfx1P48377 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC14.28□□□□□ -0.12
Rfx1P48377 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Gm3890-201ENSMUST00000182416 207 ntBASIC14.28□□□□□ -0.12
Rfx1P48377 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Rfx1P48377 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC14.28□□□□□ -0.12
Rfx1P48377 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC14.28□□□□□ -0.12
Rfx1P48377 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Rfx1P48377 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Rfx1P48377 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms