Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.39□□□□□ -0.59
Cdx2P43241 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Gm38346-201ENSMUST00000192379 2639 ntBASIC11.39□□□□□ -0.59
Cdx2P43241 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC11.38□□□□□ -0.59
Cdx2P43241 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Cdx2P43241 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC11.38□□□□□ -0.59
Cdx2P43241 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm38151-201ENSMUST00000195085 289 ntBASIC11.38□□□□□ -0.59
Cdx2P43241 Gm5100-201ENSMUST00000195631 589 ntBASIC11.38□□□□□ -0.59
Cdx2P43241 Gm6108-201ENSMUST00000208365 367 ntBASIC11.38□□□□□ -0.59
Cdx2P43241 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Cdx2P43241 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm18041-201ENSMUST00000218210 618 ntBASIC11.38□□□□□ -0.59
Cdx2P43241 AC154176.1-201ENSMUST00000225897 220 ntBASIC11.38□□□□□ -0.59
Cdx2P43241 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 Gm37348-201ENSMUST00000193104 1789 ntBASIC11.38□□□□□ -0.59
Cdx2P43241 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.38□□□□□ -0.59
Cdx2P43241 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.38□□□□□ -0.59
Cdx2P43241 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx2P43241 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC11.37□□□□□ -0.59
Cdx2P43241 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Cdx2P43241 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC11.37□□□□□ -0.59
Cdx2P43241 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC11.37□□□□□ -0.59
Cdx2P43241 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC11.37□□□□□ -0.59
Cdx2P43241 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Cdx2P43241 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm7114-201ENSMUST00000190159 1789 ntBASIC11.37□□□□□ -0.59
Cdx2P43241 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Cdx2P43241 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Cdx2P43241 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm12419-201ENSMUST00000116649 636 ntBASIC11.37□□□□□ -0.59
Cdx2P43241 Gm12856-201ENSMUST00000119471 1293 ntBASIC11.37□□□□□ -0.59
Cdx2P43241 Gm11783-201ENSMUST00000119549 885 ntBASIC11.37□□□□□ -0.59
Cdx2P43241 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
Cdx2P43241 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC11.37□□□□□ -0.59
Cdx2P43241 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm15744-201ENSMUST00000161734 213 ntBASIC11.37□□□□□ -0.59
Cdx2P43241 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC11.37□□□□□ -0.59
Cdx2P43241 Gm37981-201ENSMUST00000194280 535 ntBASIC11.37□□□□□ -0.59
Cdx2P43241 Gm45113-201ENSMUST00000207518 165 ntBASIC11.37□□□□□ -0.59
Cdx2P43241 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms