Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gm15370-201ENSMUST00000117158 253 ntBASIC12.58□□□□□ -0.4
Usp4P35123 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Usp4P35123 Gm8018-201ENSMUST00000173536 789 ntBASIC12.58□□□□□ -0.4
Usp4P35123 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC12.58□□□□□ -0.4
Usp4P35123 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC12.58□□□□□ -0.4
Usp4P35123 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.58□□□□□ -0.4
Usp4P35123 AC132384.14-201ENSMUST00000219346 1147 ntBASIC12.58□□□□□ -0.4
Usp4P35123 AC159747.1-201ENSMUST00000219903 265 ntBASIC12.58□□□□□ -0.4
Usp4P35123 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.58□□□□□ -0.4
Usp4P35123 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC12.58□□□□□ -0.4
Usp4P35123 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Usp4P35123 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.58□□□□□ -0.4
Usp4P35123 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Usp4P35123 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Usp4P35123 Gm37827-201ENSMUST00000194486 1542 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Usp4P35123 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Usp4P35123 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp4P35123 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Gm15808-201ENSMUST00000119046 604 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Gm4986-201ENSMUST00000119731 549 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Gm13492-201ENSMUST00000119772 665 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Usp4P35123 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC12.57□□□□□ -0.4
Usp4P35123 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Usp4P35123 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Usp4P35123 Mospd4-201ENSMUST00000180618 576 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Gm29199-201ENSMUST00000187766 775 ntBASIC12.57□□□□□ -0.4
Usp4P35123 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC12.57□□□□□ -0.4
Usp4P35123 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
Usp4P35123 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp4P35123 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp4P35123 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp4P35123 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Usp4P35123 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp4P35123 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Usp4P35123 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.57□□□□□ -0.4
Usp4P35123 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp4P35123 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Usp4P35123 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Usp4P35123 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp4P35123 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 BC043934-202ENSMUST00000185694 2356 ntBASIC12.56□□□□□ -0.4
Usp4P35123 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Usp4P35123 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Usp4P35123 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Usp4P35123 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gm12314-201ENSMUST00000118104 538 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Gm11591-201ENSMUST00000120063 702 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Gm13297-201ENSMUST00000120205 934 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC12.56□□□□□ -0.4
Usp4P35123 Gm20482-202ENSMUST00000174729 825 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gm9136-201ENSMUST00000193368 454 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Gm44958-201ENSMUST00000203734 736 ntBASIC12.56□□□□□ -0.4
Usp4P35123 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp4P35123 Gm7046-201ENSMUST00000221351 977 ntBASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms