Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Gm44913-201ENSMUST00000208060 2990 ntBASIC9.78□□□□□ -0.84
Sdc1P18828 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
Sdc1P18828 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Gm44152-201ENSMUST00000205007 1691 ntBASIC9.78□□□□□ -0.84
Sdc1P18828 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC9.78□□□□□ -0.84
Sdc1P18828 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC9.78□□□□□ -0.84
Sdc1P18828 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Gm42929-201ENSMUST00000198374 1286 ntBASIC9.78□□□□□ -0.84
Sdc1P18828 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 AC153929.1-201ENSMUST00000219009 303 ntBASIC9.78□□□□□ -0.84
Sdc1P18828 Gm6888-201ENSMUST00000221983 706 ntBASIC9.78□□□□□ -0.84
Sdc1P18828 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
Sdc1P18828 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC9.78□□□□□ -0.84
Sdc1P18828 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC9.78□□□□□ -0.84
Sdc1P18828 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
Sdc1P18828 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
Sdc1P18828 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
Sdc1P18828 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC9.77□□□□□ -0.84
Sdc1P18828 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
Sdc1P18828 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
Sdc1P18828 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC9.77□□□□□ -0.85
Sdc1P18828 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC9.77□□□□□ -0.85
Sdc1P18828 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC9.77□□□□□ -0.85
Sdc1P18828 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
Sdc1P18828 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Gm15467-201ENSMUST00000120582 445 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Gm9522-201ENSMUST00000182394 926 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 Igkv2-116-201ENSMUST00000199327 362 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 AC140397.2-201ENSMUST00000224213 834 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Gm6189-201ENSMUST00000164487 2082 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 AC125409.1-201ENSMUST00000223213 3370 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
Sdc1P18828 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC9.77□□□□□ -0.85
Sdc1P18828 Zbtb21-203ENSMUST00000113734 6010 ntAPPRIS P4 TSL 2 BASIC9.77□□□□□ -0.85
Sdc1P18828 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
Sdc1P18828 Gm44755-201ENSMUST00000207830 2102 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC9.77□□□□□ -0.85
Sdc1P18828 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC9.77□□□□□ -0.85
Sdc1P18828 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Sdc1P18828 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms