Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Col3a1P08121 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col3a1P08121 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Col3a1P08121 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Gm43760-201ENSMUST00000202120 3015 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC14.15□□□□□ -0.14
Col3a1P08121 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Col3a1P08121 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC14.15□□□□□ -0.14
Col3a1P08121 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC14.15□□□□□ -0.14
Col3a1P08121 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC14.15□□□□□ -0.14
Col3a1P08121 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC14.15□□□□□ -0.14
Col3a1P08121 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC14.15□□□□□ -0.14
Col3a1P08121 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col3a1P08121 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC14.15□□□□□ -0.14
Col3a1P08121 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Col3a1P08121 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 CT025553.1-201ENSMUST00000226292 299 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Gm23105-201ENSMUST00000083719 134 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Gm25517-201ENSMUST00000083865 134 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Col3a1P08121 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC14.15□□□□□ -0.14
Col3a1P08121 Gm7104-201ENSMUST00000179741 2532 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col3a1P08121 Gm18642-201ENSMUST00000206642 1400 ntBASIC14.15□□□□□ -0.14
Col3a1P08121 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col3a1P08121 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Col3a1P08121 Gm43242-201ENSMUST00000199507 1776 ntBASIC14.14□□□□□ -0.15
Col3a1P08121 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col3a1P08121 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 AC164702.1-201ENSMUST00000220135 2212 ntBASIC14.14□□□□□ -0.15
Col3a1P08121 Gm25766-201ENSMUST00000104101 131 ntBASIC14.14□□□□□ -0.15
Col3a1P08121 Gm14395-201ENSMUST00000120494 563 ntBASIC14.14□□□□□ -0.15
Col3a1P08121 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC14.14□□□□□ -0.15
Col3a1P08121 Gm42518-201ENSMUST00000196277 938 ntBASIC14.14□□□□□ -0.15
Col3a1P08121 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC14.14□□□□□ -0.15
Col3a1P08121 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col3a1P08121 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Mirlet7i-201ENSMUST00000083472 85 ntBASIC14.14□□□□□ -0.15
Col3a1P08121 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Gm4900-201ENSMUST00000222046 1628 ntBASIC14.14□□□□□ -0.15
Col3a1P08121 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Col3a1P08121 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col3a1P08121 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col3a1P08121 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col3a1P08121 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC14.14□□□□□ -0.15
Col3a1P08121 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col3a1P08121 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC14.13□□□□□ -0.15
Col3a1P08121 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms