Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col5a1O88207 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col5a1O88207 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col5a1O88207 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Col5a1O88207 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col5a1O88207 AC164107.1-201ENSMUST00000227730 2161 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm10728-201ENSMUST00000194292 1829 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm14892-201ENSMUST00000117636 267 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Gm10169-201ENSMUST00000121822 348 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm45135-201ENSMUST00000206787 1184 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC10.68□□□□□ -0.7
Col5a1O88207 AC140409.3-201ENSMUST00000215601 358 ntTSL 3 BASIC10.68□□□□□ -0.7
Col5a1O88207 AC138716.2-201ENSMUST00000226670 1016 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 n-R5s185-201ENSMUST00000083953 119 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC10.68□□□□□ -0.7
Col5a1O88207 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm44152-201ENSMUST00000205007 1691 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC10.68□□□□□ -0.7
Col5a1O88207 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm26047-201ENSMUST00000157308 113 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC10.68□□□□□ -0.7
Col5a1O88207 Gm26047-202ENSMUST00000198840 115 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Gm8342-201ENSMUST00000209839 757 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC10.68□□□□□ -0.7
Col5a1O88207 AC134537.1-201ENSMUST00000219205 265 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Gm8768-201ENSMUST00000220020 826 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 CT030652.1-201ENSMUST00000227377 1235 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col5a1O88207 Mir326-201ENSMUST00000083637 95 ntBASIC10.68□□□□□ -0.7
Col5a1O88207 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC10.67□□□□□ -0.7
Col5a1O88207 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC10.67□□□□□ -0.7
Col5a1O88207 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC10.67□□□□□ -0.7
Col5a1O88207 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC10.67□□□□□ -0.7
Col5a1O88207 Gm38089-201ENSMUST00000193585 1514 ntBASIC10.67□□□□□ -0.7
Col5a1O88207 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Col5a1O88207 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Col5a1O88207 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col5a1O88207 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms