Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cldnd1Q9CQX5 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cldnd1Q9CQX5 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cldnd1Q9CQX5 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.03
Cldnd1Q9CQX5 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
Cldnd1Q9CQX5 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cldnd1Q9CQX5 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.45■■□□□ 1.02
Cldnd1Q9CQX5 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cldnd1Q9CQX5 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cldnd1Q9CQX5 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cldnd1Q9CQX5 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Cldnd1Q9CQX5 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
Cldnd1Q9CQX5 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.44■■□□□ 1.02
Cldnd1Q9CQX5 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cldnd1Q9CQX5 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cldnd1Q9CQX5 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cldnd1Q9CQX5 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cldnd1Q9CQX5 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.42■■□□□ 1.02
Cldnd1Q9CQX5 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.42■■□□□ 1.02
Cldnd1Q9CQX5 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.42■■□□□ 1.02
Cldnd1Q9CQX5 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Cldnd1Q9CQX5 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.42■■□□□ 1.02
Cldnd1Q9CQX5 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.42■■□□□ 1.02
Cldnd1Q9CQX5 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cldnd1Q9CQX5 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cldnd1Q9CQX5 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cldnd1Q9CQX5 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC21.41■■□□□ 1.02
Cldnd1Q9CQX5 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cldnd1Q9CQX5 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cldnd1Q9CQX5 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cldnd1Q9CQX5 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cldnd1Q9CQX5 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cldnd1Q9CQX5 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cldnd1Q9CQX5 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.39■■□□□ 1.01
Cldnd1Q9CQX5 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.39■■□□□ 1.01
Cldnd1Q9CQX5 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Cldnd1Q9CQX5 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
Cldnd1Q9CQX5 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Cldnd1Q9CQX5 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Cldnd1Q9CQX5 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Cldnd1Q9CQX5 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cldnd1Q9CQX5 Gm18671-201ENSMUST00000214826 683 ntBASIC21.38■■□□□ 1.01
Cldnd1Q9CQX5 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Cldnd1Q9CQX5 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
Cldnd1Q9CQX5 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Cldnd1Q9CQX5 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.37■■□□□ 1.01
Cldnd1Q9CQX5 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cldnd1Q9CQX5 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.37■■□□□ 1.01
Cldnd1Q9CQX5 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.37■■□□□ 1.01
Cldnd1Q9CQX5 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cldnd1Q9CQX5 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cldnd1Q9CQX5 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Gm43530-201ENSMUST00000195920 274 ntBASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cldnd1Q9CQX5 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.35■■□□□ 1.01
Cldnd1Q9CQX5 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cldnd1Q9CQX5 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cldnd1Q9CQX5 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.35■■□□□ 1.01
Cldnd1Q9CQX5 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Cldnd1Q9CQX5 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Cldnd1Q9CQX5 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cldnd1Q9CQX5 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Cldnd1Q9CQX5 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cldnd1Q9CQX5 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
Cldnd1Q9CQX5 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cldnd1Q9CQX5 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cldnd1Q9CQX5 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cldnd1Q9CQX5 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cldnd1Q9CQX5 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cldnd1Q9CQX5 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cldnd1Q9CQX5 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cldnd1Q9CQX5 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Cldnd1Q9CQX5 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cldnd1Q9CQX5 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.31■■□□□ 1
Cldnd1Q9CQX5 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.31■■□□□ 1
Cldnd1Q9CQX5 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cldnd1Q9CQX5 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cldnd1Q9CQX5 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Cldnd1Q9CQX5 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cldnd1Q9CQX5 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Cldnd1Q9CQX5 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Cldnd1Q9CQX5 Smad6-203ENSMUST00000179458 273 ntBASIC21.3■■□□□ 1
Cldnd1Q9CQX5 AV356131-201ENSMUST00000206201 750 ntBASIC21.3■■□□□ 1
Cldnd1Q9CQX5 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 102.4 ms