Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ushbp1Q8R370 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ushbp1Q8R370 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ushbp1Q8R370 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ushbp1Q8R370 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ushbp1Q8R370 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ushbp1Q8R370 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ushbp1Q8R370 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ushbp1Q8R370 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ushbp1Q8R370 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Ushbp1Q8R370 Gm21956-201ENSMUST00000179946 522 ntBASIC23.14■■□□□ 1.29
Ushbp1Q8R370 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC23.14■■□□□ 1.29
Ushbp1Q8R370 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC23.14■■□□□ 1.29
Ushbp1Q8R370 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Ushbp1Q8R370 Serp2-204ENSMUST00000228055 705 ntBASIC23.14■■□□□ 1.29
Ushbp1Q8R370 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ushbp1Q8R370 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ushbp1Q8R370 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Ushbp1Q8R370 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ushbp1Q8R370 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Ushbp1Q8R370 Gm43006-201ENSMUST00000197702 1602 ntBASIC23.12■■□□□ 1.29
Ushbp1Q8R370 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Ushbp1Q8R370 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC23.12■■□□□ 1.29
Ushbp1Q8R370 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC23.12■■□□□ 1.29
Ushbp1Q8R370 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ushbp1Q8R370 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ushbp1Q8R370 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ushbp1Q8R370 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ushbp1Q8R370 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ushbp1Q8R370 Gm22238-201ENSMUST00000175222 88 ntBASIC23.11■■□□□ 1.29
Ushbp1Q8R370 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Ushbp1Q8R370 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ushbp1Q8R370 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Ushbp1Q8R370 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ushbp1Q8R370 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ushbp1Q8R370 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ushbp1Q8R370 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Ushbp1Q8R370 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ushbp1Q8R370 Gm5913-201ENSMUST00000119397 1399 ntBASIC23.1■■□□□ 1.29
Ushbp1Q8R370 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ushbp1Q8R370 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ushbp1Q8R370 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ushbp1Q8R370 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ushbp1Q8R370 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
Ushbp1Q8R370 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Ushbp1Q8R370 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ushbp1Q8R370 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ushbp1Q8R370 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC23.07■■□□□ 1.28
Ushbp1Q8R370 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ushbp1Q8R370 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC23.07■■□□□ 1.28
Ushbp1Q8R370 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
Ushbp1Q8R370 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Ushbp1Q8R370 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ushbp1Q8R370 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Gm40881-201ENSMUST00000223397 166 ntBASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Ushbp1Q8R370 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ushbp1Q8R370 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms