Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Ddb1Q3U1J4 AC166356.1-201ENSMUST00000228236 1426 ntBASIC26.79■■□□□ 1.88
Ddb1Q3U1J4 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddb1Q3U1J4 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
Ddb1Q3U1J4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC26.77■■□□□ 1.88
Ddb1Q3U1J4 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Ddb1Q3U1J4 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Ddb1Q3U1J4 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC26.77■■□□□ 1.88
Ddb1Q3U1J4 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC26.76■■□□□ 1.87
Ddb1Q3U1J4 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC26.76■■□□□ 1.87
Ddb1Q3U1J4 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Ddb1Q3U1J4 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddb1Q3U1J4 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddb1Q3U1J4 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddb1Q3U1J4 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddb1Q3U1J4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddb1Q3U1J4 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC26.74■■□□□ 1.87
Ddb1Q3U1J4 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Ddb1Q3U1J4 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Ddb1Q3U1J4 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC26.73■■□□□ 1.87
Ddb1Q3U1J4 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
Ddb1Q3U1J4 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC26.72■■□□□ 1.87
Ddb1Q3U1J4 Gm43530-201ENSMUST00000195920 274 ntBASIC26.72■■□□□ 1.87
Ddb1Q3U1J4 Gm18671-201ENSMUST00000214826 683 ntBASIC26.72■■□□□ 1.87
Ddb1Q3U1J4 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ddb1Q3U1J4 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ddb1Q3U1J4 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Ddb1Q3U1J4 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ddb1Q3U1J4 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ddb1Q3U1J4 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Ddb1Q3U1J4 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
Ddb1Q3U1J4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
Ddb1Q3U1J4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
Ddb1Q3U1J4 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
Ddb1Q3U1J4 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
Ddb1Q3U1J4 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ddb1Q3U1J4 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC26.69■■□□□ 1.86
Ddb1Q3U1J4 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ddb1Q3U1J4 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC26.68■■□□□ 1.86
Ddb1Q3U1J4 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC26.68■■□□□ 1.86
Ddb1Q3U1J4 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ddb1Q3U1J4 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ddb1Q3U1J4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
Ddb1Q3U1J4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
Ddb1Q3U1J4 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ddb1Q3U1J4 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ddb1Q3U1J4 Smad6-203ENSMUST00000179458 273 ntBASIC26.67■■□□□ 1.86
Ddb1Q3U1J4 Gm10033-202ENSMUST00000211874 928 ntBASIC26.67■■□□□ 1.86
Ddb1Q3U1J4 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ddb1Q3U1J4 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ddb1Q3U1J4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.66■■□□□ 1.86
Ddb1Q3U1J4 AV356131-201ENSMUST00000206201 750 ntBASIC26.66■■□□□ 1.86
Ddb1Q3U1J4 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ddb1Q3U1J4 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ddb1Q3U1J4 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC26.65■■□□□ 1.86
Ddb1Q3U1J4 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC26.65■■□□□ 1.86
Ddb1Q3U1J4 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC26.65■■□□□ 1.86
Ddb1Q3U1J4 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ddb1Q3U1J4 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Ddb1Q3U1J4 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC26.64■■□□□ 1.86
Ddb1Q3U1J4 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Ddb1Q3U1J4 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Ddb1Q3U1J4 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.85
Ddb1Q3U1J4 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ddb1Q3U1J4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ddb1Q3U1J4 Gm10209-201ENSMUST00000203397 1607 ntBASIC26.61■■□□□ 1.85
Ddb1Q3U1J4 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ddb1Q3U1J4 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ddb1Q3U1J4 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC26.61■■□□□ 1.85
Ddb1Q3U1J4 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ddb1Q3U1J4 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ddb1Q3U1J4 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ddb1Q3U1J4 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms