Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC19.82■□□□□ 0.76
Cdx2P43241 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cdx2P43241 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.81■□□□□ 0.76
Cdx2P43241 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Cdx2P43241 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cdx2P43241 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cdx2P43241 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cdx2P43241 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Cdx2P43241 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Cdx2P43241 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Cdx2P43241 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Cdx2P43241 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cdx2P43241 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cdx2P43241 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cdx2P43241 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Cdx2P43241 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
Cdx2P43241 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.8■□□□□ 0.76
Cdx2P43241 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cdx2P43241 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cdx2P43241 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cdx2P43241 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx2P43241 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.79■□□□□ 0.76
Cdx2P43241 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.79■□□□□ 0.76
Cdx2P43241 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx2P43241 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.79■□□□□ 0.76
Cdx2P43241 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx2P43241 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Cdx2P43241 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Cdx2P43241 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx2P43241 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx2P43241 Gm6085-201ENSMUST00000182774 1470 ntBASIC19.79■□□□□ 0.76
Cdx2P43241 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx2P43241 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx2P43241 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx2P43241 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx2P43241 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx2P43241 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.78■□□□□ 0.76
Cdx2P43241 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx2P43241 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx2P43241 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx2P43241 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx2P43241 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cdx2P43241 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.77■□□□□ 0.76
Cdx2P43241 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cdx2P43241 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cdx2P43241 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.77■□□□□ 0.76
Cdx2P43241 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC19.77■□□□□ 0.76
Cdx2P43241 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cdx2P43241 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Cdx2P43241 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx2P43241 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx2P43241 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx2P43241 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx2P43241 Gm26833-201ENSMUST00000180899 440 ntBASIC19.76■□□□□ 0.75
Cdx2P43241 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Cdx2P43241 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
Cdx2P43241 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx2P43241 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Cdx2P43241 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdx2P43241 H3f3aos-201ENSMUST00000097448 2905 ntBASIC19.75■□□□□ 0.75
Cdx2P43241 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdx2P43241 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Cdx2P43241 Gm43530-201ENSMUST00000195920 274 ntBASIC19.75■□□□□ 0.75
Cdx2P43241 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.75■□□□□ 0.75
Cdx2P43241 Spcs1-204ENSMUST00000226782 949 ntBASIC19.75■□□□□ 0.75
Cdx2P43241 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdx2P43241 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdx2P43241 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Cdx2P43241 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdx2P43241 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdx2P43241 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdx2P43241 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Cdx2P43241 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC19.74■□□□□ 0.75
Cdx2P43241 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
Cdx2P43241 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdx2P43241 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Cdx2P43241 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdx2P43241 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Cdx2P43241 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cdx2P43241 Gm43060-201ENSMUST00000200621 289 ntBASIC19.73■□□□□ 0.75
Cdx2P43241 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdx2P43241 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cdx2P43241 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdx2P43241 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.73■□□□□ 0.75
Cdx2P43241 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cdx2P43241 Gm7291-201ENSMUST00000199147 382 ntBASIC19.72■□□□□ 0.75
Cdx2P43241 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
Cdx2P43241 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cdx2P43241 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.71■□□□□ 0.75
Cdx2P43241 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.71■□□□□ 0.75
Cdx2P43241 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 1759.4 ms